Neuroinformatics Assembly 2023 - Program
| 14:00-14:20 CEST | Welcome! Chair: TBD
Location: Presentation Room 1
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| 14:30-16:00 CEST |
Session 1: A FAIR roadmap for knowledge graphs and ontologiesChairs: TBD
Location: Presentation Room 1 |
| 16:30-17:30 CEST |
Session 2: FAIR sharing, integration, & analysis of neuroscience dataChairs: TBD
Location: Presentation Room 1 |
| 17:30-18:00 CEST | BREAK |
| Parallel sessions 18:00-21:00 CEST |
18:00-21:00 CEST Session 3: Streamlining Cross-Platform Data Integration: Processes and Solutions for Rapidly Developing an Integrated Workflow Across Independent Systems for the US BRAIN Initiative Cell CensusChairs: Bing-Xing Huo, Patrick Ray, Maryann Martone
Location: Presentation Room 1 The workshop will cover topics at ecosystem level such as standardization, governance, and success metrics drawing from experiences in the US BRAIN Initiative Cell Census Network (BICCN) and its next phase, the BRAIN Initiative Cell Atlas Network (BICAN), with a focus on streamlining integrated workflows across independent systems. The challenge in both these projects was to quickly develop an end-to-end system to support the specific requirements of these consortia from systems that were developed independently. Projects like these present the ultimate use cases for FAIR, as FAIR practices should greatly reduce the barrier to integration and increase the usability of the data. 19:00-20:30 CEST Session 4: “Is this FAIR?”: Transparency in EDI & career development & managementChair: TBD
Location: Presentation Room 2
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| 21:00-21:30 CEST | BREAK |
| 21:30-22:30 CEST | Poster Session 1Location: Poster Hall |
| 02:00-03:00 CEST | Poster Session 2Location: Poster Hall |
| 13:00-14:00 CEST | Poster Session 3Location: Poster Hall |
| 14:00-14:30 CEST | BREAK |
| 14:30-18:30 CEST |
Session 5.1: Infrastructure for Sensitive DataChairs: Petra Ritter
Location: Presentation Room 1 Presentation of the new EBRAINS privacy-compliant and scalable services for brain research to store, share and analyze complex multi-modal FAIR sensitive neuroscience data originating from human subjects: Health Data Cloud (HDC). The workshop provides participants both lecture and hands-on training session. |
| 18:30-19:00 CEST | BREAK |
| Parallel sessions 19:00-22:00 CEST |
19:00-22:00 CEST Session 5.2: Continuation: Hands on session for Infrastructure for Sensitive DataChairs: Petra Ritter
Location: Presentation Room 1 Presentation of the new EBRAINS privacy-compliant and scalable services for brain research to store, share and analyze complex multi-modal FAIR sensitive neuroscience data originating from human subjects: Health Data Cloud (HDC). The workshop provides participants both lecture and hands-on training session. 19:00-22:00 CEST Session 6: Research workflows for collaborative neuroscienceChair: Dimitri Yatsenko
Location: Presentation Room 2 In this workshop, general approaches to workflow management, team organizations, software tools, and online platforms and resources will be reviewed. Across various projects, from neurophysiology to genomics, these workflows are transforming the way that scientists conduct research, opening up new avenues for discovery and innovation. |
| Parallel sessions 11:30-15:30 CEST |
11:30-15:30 CEST Session 7: Practical guide to overcome the reproducibility crisis in small animal neuroimaging: workflows, tools, and repositoriesChairs: Markus Aswendt, Joanes Grandjean
Location: Presentation Room 1 The workshop will include interactive seminars given by selected experts in the field covering all aspects of (FAIR) small animal MRI data acquisition, analysis, and sharing. The seminars will be followed by hands-on training where participants will perform use case scenarios using software established by the organizers. This will include an introduction to the basics of using command line interfaces, Python installation, working with Docker/Singularity containers, Datalad/Git, and BIDS. 11:30-15:30 CEST Session 8.1 AI for Neurodegenerative DiseasesChair: Mah Parsa
Location: Presentation Room 2
Discussing the ongoing projects for: 14:00-15:30 CEST Session 9: FAIR data: The role of journalsChair: Jan Bjaalie
Location: Presentation Room 3 Discussion about how journal policies and recommendations contribute to open and FAIR neuroscience and influence the findability and interoperability of public data. |
| 15:30-16:00 CEST | BREAK |
| Parallel sessions 16:00-19:00 CEST |
16:00-19:00 CEST Session 10: Event annotation in neuroimaging using HED: from experiment to analysisChair: Scott Makeig
Location: Presentation Room 1 Workshop on the need for, structure of, tools for, and use of HED annotation to prepare neuroimaging time series data for storing, sharing, and advanced analysis. 16:00-19:00 CEST CEST Session 8.2 Continuation: AI for Neurodegenerative DiseasesChair: Mah Parsa
Location: Presentation Room 2 Discussing the ongoing projects for: 16:00-19:00 CEST Session 11: TBAChair: TBA
Location: Presentation Room 3
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| 09:00-12:00 CEST | Satellite Session 1.1: Neuroscience data integration through use of digital brain atlasesCREDIT COURSE - Level: PhD, Credits: 2 ECTS Chair: Trygve Leergaard
Location: Zoom The course will be arranged as a digital Satellite event to the 2023 INCF Neuroinformatics assembly. Read more about the course under the tab Digital Brain Atlasing |
12:00-13:00 CEST | BREAK |
| 13:00-16:00 CEST | Satellite Session 1.2: Neuroscience data integration through use of digital brain atlasesCREDIT COURSE - Level: PhD, Credits: 2 ECTS Chair: Trygve Leergaard
Location: Zoom/p> The course will be arranged as a digital Satellite event to the 2023 INCF Neuroinformatics assembly. Read more about the course under the tab Digital Brain Atlasing |
| 09:00-12:00 CEST | Satellite Session 1.3: Neuroscience data integration through use of digital brain atlasesCREDIT COURSE - Level: PhD, Credits: 2 ECTS Chair: Trygve Leergaard
Location: Zoom The course will be arranged as a digital Satellite event to the 2023 INCF Neuroinformatics assembly. Read more about the course under the tab Digital Brain Atlasing |
12:00-13:00 CEST | BREAK |
| 13:00-16:00 CEST | Satellite Session 1.4: Neuroscience data integration through use of digital brain atlasesCREDIT COURSE - Level: PhD, Credits: 2 ECTS Chair: Trygve Leergaard
Location: Zoom/p> The course will be arranged as a digital Satellite event to the 2023 INCF Neuroinformatics assembly. Read more about the course under the tab Digital Brain Atlasing |