Approved Abstracts - INCF Neuroinformatics Assembly 2022
Clinical neuroscience
226
How impulsiveness influences obesity: the mediating effect by resting-state brain activity of dlPFC
Submitter information
Name: Hui Zheng
Affiliation: Shanghai Mental Health Center
Digital atlasing
249
Workflows for automated analysis of mouse brain imaging data
Submitter information
Name: Markus Aswendt
Affiliation: University Hospital Cologne
Artificial intelligence
251
An Introduction to Developmental Embodied Neurosimulation
Submitter information
Name: Bradly Alicea
Affiliation: OpenWorm Foundation
Open science + publishing
256
NeuroBridge ontology development for shared neuroimaging datasets
Submitter information
Name: Jessica Turner
Affiliation: Georgia State University
Open science + publishing
258
NWB Inspector of Best Practices for NWB Files
Submitter information
Name: Cody Baker
Affiliation: CatalystNeuro
Neuroimaging
262
PET2BIDS: a library for converting Positron Emission Tomography data to BIDS
Submitter information
Name: Cyril Pernet
Affiliation: Neurobiology Research Unit
General neuroinformatics
264
Active Segmentation: Differential Geometry meets Machine Learning
Submitter information
Name: Dimiter Prodanov
Affiliation: NERF, Leuven, Belgium
Computational neuroscience
265
Facilitating model verification with automatic robustness and precision checks
Submitter information
Name: Florent Bonnier
Affiliation: Paris-Saclay Institute of Neuroscience, CNRS, Université Paris-Saclay
Large-scale modeling
266
AutSim: Principled, data-driven model development and abstraction for synaptic translation in Fragile X Syndrome (FXS) and healthy control.
Submitter information
Name: Nisha Ann Viswan
Affiliation: National Centre for Biological Sciences
Data management
268
Towards a standard data organisation for animal electrophysiology experiments - An update on the BIDS Extension Proposal 032
Submitter information
Name: Julia Sprenger
Affiliation: Institut de Neuroscience de la Timone, CNRS, Aix-Marseille University, France
Data management
271
Advances in the process of data collection from the online neurorehabilitation system
Submitter information
Name: Roman Mouček
Affiliation: University of West Bohemia
Computational neuroscience
272
MEEGqc - a quality control workflow for MEEG data
Submitter information
Name: Aaron Reer
Affiliation: Scientific software engineer/data scientist
Data management
274
Large-scale data management and sharing with Zarr and webKnossos
Submitter information
Name: Norman Rzepka
Affiliation: scalable minds GmbH
Data management
275
Linking NeuroBridge and NeuroQuery with Deep Semantic Matching
Submitter information
Name: Howard Lander
Affiliation: UNC Chapel Hill
Infrastructural and portal services
278
AnalySim: A science gateway for collaborative data sharing and analysis for research
Submitter information
Name: Cengiz Gunay
Affiliation: Georgia Gwinnett College
General neuroinformatics
280
NIDM-Terms: Techniques and Controlled Vocabularies for Annotating Datasets to Maximize Findability and Reuse
Submitter information
Name: Nazek Queder
Affiliation: University of California, Irvine
General neuroinformatics
282
NIDM-Experiment: A Controlled Vocabulary for Annotating Neuroscience-related Datasets
Submitter information
Name: Karl Helmer
Affiliation: Massachusetts General Hospital
Data systems
283
Brain Injury Knowledge Ontology for Traumatic Brain Injury (BIKO-TBI)
Submitter information
Name: Monique Surles-Zeigler
Affiliation: University of California, San Diego
Artificial intelligence
288
LSTM Autoencoders for EEG correction and an analysis of its latent space
Submitter information
Name: Arnau Saumell
Affiliation: Starlab
Digital atlasing
293
Mapping the distribution of neurochemically-defined cell types throughout the primate cortex
Submitter information
Name: Piotr Majka
Affiliation: Nencki Institute of Experimental Biology
Data management
295
FAIRly big: A framework for reproducible processing of large-scale data - a UK Biobank showcase
Submitter information
Name: Adina Wagner
Affiliation: Research center Juelich
Data management
296
A Data Steward Walks into a Bar: Experiences managing open and restricted brain imaging data
Submitter information
Name: Laura Waite
Affiliation: Research Center Juelich
Computational neuroscience
297
A Cartesian Coordinate System for the Human Forebrain
Submitter information
Name: John LaMuth
Affiliation: American Univ. of Sovereign Nations
Electrophysiology
299
The detection and prediction of traumatic stress-related fears by the methods of machine learning in a rat model of post-traumatic stress disorder (PTSD)
Submitter information
Name: Shao-Han Chang
Affiliation: Institute of Biomedical Sciences, Academia Sinica
Data management
300
Metalad, a flexible Metadata system
Submitter information
Name: Christian Mönch
Affiliation: Research Center Juelich
Computational neuroscience
301
Brian2CUDA: Flexible and Efficient Simulation of Spiking Neural Network Models on GPUs
Submitter information
Name: Denis Alevi
Affiliation: Technische Universität Berlin
Digital atlasing
304
NeuronsReunited-viewer: a 3d-visual interactive web portal that integrates large databases of long-range projection neurons in mouse.
Submitter information
Name: Rembrandt Bakker
Affiliation: Radboud University Nijmegen and Jülich Forschungszentrum
Data management
306
DataCat: Generate a user-friendly data browser from structured metadata using DataLad Catalog
Submitter information
Name: Stephan Heunis
Affiliation: Forschungszentrum Jülich, Germany
Computational neuroscience
310
Deep Learning-based Analysis of White Matter Variation in Schizophrenia Patients
Submitter information
Name: Indranath Chatterjee
Affiliation: Tongmyong University, Busan, South Korea
Computational neuroscience
311
Open Source Brain v2.0: closing the loop between experimental neuroscience data and computational models
Submitter information
Name: Padraig Gleeson
Affiliation: UCL
Brain disorders
314
INSILCO STRUCTURAL PREDICTION AND FUNCTIONAL CHARACTERIZATION OF HUMAN POST SYNAPTIC PROTEOME AND ITS RELEVANCE IN NEUROLOGICAL DISEASES.
Submitter information
Name: Deepika Bhat
Affiliation: Sir M Visvesvaraya Institute of Technology, Karnataka, India
Open science + publishing
315
From neuroinformatics to neuroethics: the essential role of standardization and scientific reporting for integrating knowledge across domains
Submitter information
Name: Zach McKinney
Affiliation: IEEE Standards Working Group P2794 (Reporting Standard for Neural Interface Research)
Data systems
317
DANDI: An archive and collaboration space for cellular neurophysiology projects
Submitter information
Name: Yaroslav Halchenko
Affiliation: Dartmouth College
BCI
318
Visualizing, describing and reviewing BCIs' workflow from data: what's needed?
Submitter information
Name: Luigi Bianchi
Affiliation: Tor Vergata University of Rome
Artificial intelligence
319
Trustworthy AI for Dementia
Submitter information
Name: Mah Parsa
Affiliation: CRIM
Data management
320
A Complete Data Pipeline for Calcium Imaging in DataJoint
Submitter information
Name: Tolga Dincer
Affiliation: DataJoint
Genomics and genetics
321
The SPARC Connectivity Knowledge Base of the Autonomic Nervous System
Submitter information
Name: Tom Gillespie
Affiliation: University of California, San Diego
Connectomics
332
Leveraging mouse and rat brain atlases to standardize brain-wide mapping in serial sections and cleared intact brain volumes across experiments.
Submitter information
Name: Aidan Sullivan
Affiliation: MBF Bioscience
General neuroinformatics
355
The Credibility Loop: Meta-Analysis of Two Experiments Studying Credibility Evaluations using EEG
Submitter information
Name: Adam Wierzbicki
Affiliation: Polish-Japanese Academy of Information Technology
Computational neuroscience
357
Unsupervised network embedding for Drosophila adult brain connectome
Submitter information
Name: Xiyang Sun
Affiliation: RIKEN CBS
Large-scale modeling
358
Validating the impact of sample size for modeling brain and behaviour interactions with canonical correlation analysis.
Submitter information
Name: Brent McPherson
Affiliation: McGill University
Neuroimaging
359
Garbage In, Garbage Out : Protocol Compliance, Integrity and Quality Assurance Of Neuroimaging Datasets
Submitter information
Name: Pradeep Reddy Raamana
Affiliation: University of Pittsburgh
Open science + publishing
360
Magnetic resonance imaging datasets with anatomical fiducials for quality control and registration
Submitter information
Name: Alaa Taha
Affiliation: Biomedical Engineering; University of Western Ontario
Neuroimaging
361
GUI-based, extensible, scalable framework for neural image data analysis --- OptiNiSt
Submitter information
Name: yukako yamane
Affiliation: Okinawa Institute of Science and Technology Graduate University
Data management
364
Electronic laboratory notebook platform to capture metadata describing the experimental setup and context of neuroimaging experiments
Submitter information
Name: Praveen Sripad
Affiliation: Max Planck Institute for Empirical Aesthetics
Neuroimaging
365
Multimodal analysis uncovers links between grey matter volume and frequency-specific connectivity states in schizophrenia
Submitter information
Name: Marlena Duda
Affiliation: Georgia State University