2022 Abstract list | Neuroinformatics Assembly - Neuroscience conference by INCF

Approved Abstracts - INCF Neuroinformatics Assembly 2022

Clinical neuroscience

226

How impulsiveness influences obesity: the mediating effect by resting-state brain activity of dlPFC

Authors: Hui Zheng, Zi-Qi Liu, Ti-Fei Yuan

Presenting author: Hui Zheng

Submitter information
Name: Hui Zheng
Affiliation: Shanghai Mental Health Center

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Digital atlasing

249

Workflows for automated analysis of mouse brain imaging data

Authors: Aref Kalantari, Leon Scharwächter, Felix Schmitt, Niklas Pallast, Gereon R. Fink, Markus Aswendt

Presenting author: Markus Aswendt

Submitter information
Name: Markus Aswendt
Affiliation: University Hospital Cologne

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Artificial intelligence

251

An Introduction to Developmental Embodied Neurosimulation

Authors: Bradly Alicea, Daniela Cialfi, Rishabh Chakraborty, Stefan Dvoretskii, Sam Felder, Ziyi Gong, Akshara Gopi, Ankit Gupta, Avery Lim, and Jesse Parent

Presenting author: Bradly Alicea

Submitter information
Name: Bradly Alicea
Affiliation: OpenWorm Foundation

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Open science + publishing

256

NeuroBridge ontology development for shared neuroimaging datasets

Authors: Jessica A. Turner, Matthew D. Turner, Abhishek Appaji, Arcot K. Rajasekar, Lei Wang, Satya Sahoo

Presenting author: Satya Sahoo

Submitter information
Name: Jessica Turner
Affiliation: Georgia State University

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Open science + publishing

258

NWB Inspector of Best Practices for NWB Files

Authors: Cody Baker, Oliver Ruebel, and Benjamin Dichter

Presenting author: Cody Baker

Submitter information
Name: Cody Baker
Affiliation: CatalystNeuro

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Neuroimaging

262

PET2BIDS: a library for converting Positron Emission Tomography data to BIDS

Authors: Anthony Galassi, Martin Norgaard, Claus Svarer, Chris Rorden, Gabriel Gonzalez-Escamilla, Paul Wighton, Russell Poldrack, Douglas Greve, Adam Thomas, Robert Innis, Gitte Moos Knudsen, Melanie Ganz & Cyril Pernet.

Presenting author: Cyril Pernet

Submitter information
Name: Cyril Pernet
Affiliation: Neurobiology Research Unit

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General neuroinformatics

264

Active Segmentation: Differential Geometry meets Machine Learning

Authors: Dimiter Prodanov and Sumit Vohra

Presenting author: Dimiter Prodanov

Submitter information
Name: Dimiter Prodanov
Affiliation: NERF, Leuven, Belgium

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Computational neuroscience

265

Facilitating model verification with automatic robustness and precision checks

Authors: Florent Bonnier, Andrew Davison,

Presenting author: Florent Bonnier

Submitter information
Name: Florent Bonnier
Affiliation: Paris-Saclay Institute of Neuroscience, CNRS, Université Paris-Saclay

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Large-scale modeling

266

AutSim: Principled, data-driven model development and abstraction for synaptic translation in Fragile X Syndrome (FXS) and healthy control.

Authors: Nisha Ann Viswan, Upinder Singh Bhalla

Presenting author: Nisha Ann Viswan

Submitter information
Name: Nisha Ann Viswan
Affiliation: National Centre for Biological Sciences

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Data management

268

Towards a standard data organisation for animal electrophysiology experiments - An update on the BIDS Extension Proposal 032

Authors: Julia Sprenger, Killian Rochet, Sylvain Takerkart

Presenting author: Julia Sprenger

Submitter information
Name: Julia Sprenger
Affiliation: Institut de Neuroscience de la Timone, CNRS, Aix-Marseille University, France

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Data management

271

Advances in the process of data collection from the online neurorehabilitation system

Authors: Roman Mouček, Petr Brůha, Michal Horký, Pavel Šnejdar

Presenting author: Roman Mouček

Submitter information
Name: Roman Mouček
Affiliation: University of West Bohemia

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Computational neuroscience

272

MEEGqc - a quality control workflow for MEEG data

Authors: Aaron Reer, Evgeniia Gapotsneva

Presenting author: Aaron Reer

Submitter information
Name: Aaron Reer
Affiliation: Scientific software engineer/data scientist

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Data management

274

Large-scale data management and sharing with Zarr and webKnossos

Authors: Norman Rzepka

Presenting author: Norman Rzepka

Submitter information
Name: Norman Rzepka
Affiliation: scalable minds GmbH

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Data management

275

Linking NeuroBridge and NeuroQuery with Deep Semantic Matching

Authors: Howard Lander, Arcot Rajasekar, Yue Wang, Matt Watson, Satya Sahoo, Jessica Turner, Jean-Baptiste Poline, Lei Wang

Presenting author: Howard Lander

Submitter information
Name: Howard Lander
Affiliation: UNC Chapel Hill

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Infrastructural and portal services

278

AnalySim: A science gateway for collaborative data sharing and analysis for research

Authors: Ryan Gambrell, Ahkeelah Lindo, Anca Doloc-Mihu, Cengiz Gunay

Presenting author: Cengiz Gunay

Submitter information
Name: Cengiz Gunay
Affiliation: Georgia Gwinnett College

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General neuroinformatics

280

NIDM-Terms: Techniques and Controlled Vocabularies for Annotating Datasets to Maximize Findability and Reuse

Authors: Nazek Queder, Sanu Ann Abraham, Karl G. Helmer, Theo G.M. van Erp, Sebastian G.W. Urchs, Jean-Baptiste Poline, Jeffrey S. Grethe, Satrajit Ghosh, David Keator

Presenting author: David Keator

Submitter information
Name: Nazek Queder
Affiliation: University of California, Irvine

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General neuroinformatics

282

NIDM-Experiment: A Controlled Vocabulary for Annotating Neuroscience-related Datasets

Authors: Karl G. Helmer, Satrajit Ghosh, Jeffrey S. Grethe, Jean-Baptiste Poline, Theo G.M. van Erp, David Keator

Presenting author: Karl G. Helmer

Submitter information
Name: Karl Helmer
Affiliation: Massachusetts General Hospital

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Data systems

283

Brain Injury Knowledge Ontology for Traumatic Brain Injury (BIKO-TBI)

Authors: Monique C. Surles-Zeigler, Jeffrey S. Grethe, Adam R. Ferguson, Maryann E. Martone

Presenting author: Monique C. Surles-Zeigler

Submitter information
Name: Monique Surles-Zeigler
Affiliation: University of California, San Diego

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Artificial intelligence

288

LSTM Autoencoders for EEG correction and an analysis of its latent space

Authors: Arnau Saumell, Karan Chugani, Aureli Soria-Frisch

Presenting author: Arnau Saumell

Submitter information
Name: Arnau Saumell
Affiliation: Starlab

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Digital atlasing

293

Mapping the distribution of neurochemically-defined cell types throughout the primate cortex

Authors: Piotr Majka, Nafiseh Atapour, Sylwia Bednarek, Agata Kulesza, Gabriela Saworksa, Katrina H Worthy, Marcello G P Rosa

Presenting author: Piotr Majka

Submitter information
Name: Piotr Majka
Affiliation: Nencki Institute of Experimental Biology

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Data management

295

FAIRly big: A framework for reproducible processing of large-scale data - a UK Biobank showcase

Authors: Adina Wagner, Laura Waite, Małgorzata Wierzba, Felix Hoffstaedter, Alexander Q. Waite, Benjamin Poldrack, Simon B. Eickhoff & Michael Hanke

Presenting author: Adina Wagner

Submitter information
Name: Adina Wagner
Affiliation: Research center Juelich

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Data management

296

A Data Steward Walks into a Bar: Experiences managing open and restricted brain imaging data

Authors: Laura K. Waite, Alexander Q. Waite, Michael Hanke

Presenting author: Laura K. Waite

Submitter information
Name: Laura Waite
Affiliation: Research Center Juelich

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Computational neuroscience

297

A Cartesian Coordinate System for the Human Forebrain

Authors: John E. LaMuth

Presenting author: John E. LaMuth

Submitter information
Name: John LaMuth
Affiliation: American Univ. of Sovereign Nations

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Electrophysiology

299

The detection and prediction of traumatic stress-related fears by the methods of machine learning in a rat model of post-traumatic stress disorder (PTSD)

Authors: Chen-Yi Lin, Shao-Han Chang, Dr. Bai- Chuang Shyu

Presenting author: Shao-Han Chang

Submitter information
Name: Shao-Han Chang
Affiliation: Institute of Biomedical Sciences, Academia Sinica

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Data management

300

Metalad, a flexible Metadata system

Authors: Christian Mönch, Michael Hanke, Benjamin Poldrack, Stephan Heunis

Presenting author: Christian Mönch

Submitter information
Name: Christian Mönch
Affiliation: Research Center Juelich

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Computational neuroscience

301

Brian2CUDA: Flexible and Efficient Simulation of Spiking Neural Network Models on GPUs

Authors: Denis Alevi, Marcel Stimberg, Henning Sprekeler, Klaus Obermayer, Moritz Augustin

Presenting author: Denis Alevi

Submitter information
Name: Denis Alevi
Affiliation: Technische Universität Berlin

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Digital atlasing

304

NeuronsReunited-viewer: a 3d-visual interactive web portal that integrates large databases of long-range projection neurons in mouse.

Authors: Rembrandt Bakker, Nestor Timonidis, Mario Rubio-Teves, Maria García-Amado, Francisco Clascá, Paul Tiesinga

Presenting author: Rembrandt Bakker

Submitter information
Name: Rembrandt Bakker
Affiliation: Radboud University Nijmegen and Jülich Forschungszentrum

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Data management

306

DataCat: Generate a user-friendly data browser from structured metadata using DataLad Catalog

Authors: Stephan Heunis, Christian Mönch, Benjamin Poldrack, and Michael Hanke.

Presenting author: Stephan Heunis

Submitter information
Name: Stephan Heunis
Affiliation: Forschungszentrum Jülich, Germany

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Computational neuroscience

310

Deep Learning-based Analysis of White Matter Variation in Schizophrenia Patients

Authors: Indranath Chatterjee (Tongmyong University, South Korea), Videsha Bansal (JK Lakshmipat University, India), Sunghyun Kim (Tongmyong University, South Korea)

Presenting author: Indranath Chatterjee, Videsha Bansal, Sunghyun Kim

Submitter information
Name: Indranath Chatterjee
Affiliation: Tongmyong University, Busan, South Korea

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Computational neuroscience

311

Open Source Brain v2.0: closing the loop between experimental neuroscience data and computational models

Authors: Padraig Gleeson, Ankur Sinha, Filippo Ledda, Matteo Cantarelli, Salvador Dura-Bernal, R. Angus Silver

Presenting author: Padraig Gleeson

Submitter information
Name: Padraig Gleeson
Affiliation: UCL

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Brain disorders

314

INSILCO STRUCTURAL PREDICTION AND FUNCTIONAL CHARACTERIZATION OF HUMAN POST SYNAPTIC PROTEOME AND ITS RELEVANCE IN NEUROLOGICAL DISEASES.

Authors: Jagadeesh Kumar D, Priya Narayan, Deepika Bhat, Aashitha C Shekar.

Presenting author: Deepika Bhat, Aashitha C Shekar

Submitter information
Name: Deepika Bhat
Affiliation: Sir M Visvesvaraya Institute of Technology, Karnataka, India

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Open science + publishing

315

From neuroinformatics to neuroethics: the essential role of standardization and scientific reporting for integrating knowledge across domains

Authors: Zach McKinney, Dimiter Prodanov, Sumit Soman, Aureli Soria-Frisch, Luigi Bianchi, Martijn de Neeling

Presenting author: Zach McKinney

Submitter information
Name: Zach McKinney
Affiliation: IEEE Standards Working Group P2794 (Reporting Standard for Neural Interface Research)

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Data systems

317

DANDI: An archive and collaboration space for cellular neurophysiology projects

Authors: Y.O. Halchenko, S. Ghosh, B. Dichter, R. Choudhury, D. Chiquito, J. Nesbitt, B. Helba, M. VanDenburgh, J.T. Wodder II, H.I. Ioanas, D. Jarecka

Presenting author: Y.O. Halchenko

Submitter information
Name: Yaroslav Halchenko
Affiliation: Dartmouth College

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BCI

318

Visualizing, describing and reviewing BCIs' workflow from data: what's needed?

Authors: Guillermo Sahonero, Pradeep Balachandran. Luigi Bianchi

Presenting author: Luigi Bianchi

Submitter information
Name: Luigi Bianchi
Affiliation: Tor Vergata University of Rome

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Artificial intelligence

319

Trustworthy AI for Dementia

Authors: Mah Parsa

Presenting author: Mah Parsa

Submitter information
Name: Mah Parsa
Affiliation: CRIM

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Data management

320

A Complete Data Pipeline for Calcium Imaging in DataJoint

Authors: Tolga Dincer, Thinh Nguyen, Kabilar Gunalan, Chris Brozdowski, Dimitri Yatsenko

Presenting author: Tolga Dincer

Submitter information
Name: Tolga Dincer
Affiliation: DataJoint

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Genomics and genetics

321

The SPARC Connectivity Knowledge Base of the Autonomic Nervous System

Authors: Tom Gillespie, Bernard de Bono, Monique Surles-Zeigler, Natallia Kokash, Fahim Imam, Jyl Boline, Jeffrey Grethe, Maryann Martone

Presenting author: Tom Gillespie

Submitter information
Name: Tom Gillespie
Affiliation: University of California, San Diego

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Connectomics

332

Leveraging mouse and rat brain atlases to standardize brain-wide mapping in serial sections and cleared intact brain volumes across experiments.

Authors: N. J. O’CONNOR1, B. S. EASTWOOD1, P. J. ANGSTMAN1, A. D. LEDUC1, N. D. LIESE1 C. R. GERFEN2, J. R. GLASER1

Presenting author: Nathan J. O'Connor

Submitter information
Name: Aidan Sullivan
Affiliation: MBF Bioscience

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General neuroinformatics

355

The Credibility Loop: Meta-Analysis of Two Experiments Studying Credibility Evaluations using EEG

Authors: Andrzej Kawiak, Łukasz Kwaśniewicz, Piotr Schneider, Adam Wierzbicki, Grzegorz Wójcik

Presenting author: Adam Wierzbicki

Submitter information
Name: Adam Wierzbicki
Affiliation: Polish-Japanese Academy of Information Technology

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Computational neuroscience

357

Unsupervised network embedding for Drosophila adult brain connectome

Authors: Xiyang Sun, Fumiyasu Komaki

Presenting author: Xiyang Sun

Submitter information
Name: Xiyang Sun
Affiliation: RIKEN CBS

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Large-scale modeling

358

Validating the impact of sample size for modeling brain and behaviour interactions with canonical correlation analysis.

Authors: Michelle Wang, Brent McPherson, Jerome Dockes, Nikhil Bhagwat, JB Poline

Presenting author: Michelle Wang

Submitter information
Name: Brent McPherson
Affiliation: McGill University

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Neuroimaging

359

Garbage In, Garbage Out : Protocol Compliance, Integrity and Quality Assurance Of Neuroimaging Datasets

Authors: Harsh Sinha, Tanupat Boonchalermvichien, and Pradeep Reddy Raamana

Presenting author: Harsh Sinha

Submitter information
Name: Pradeep Reddy Raamana
Affiliation: University of Pittsburgh

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Open science + publishing

360

Magnetic resonance imaging datasets with anatomical fiducials for quality control and registration

Authors: Alaa Taha, Greydon Gilmore, Mohamad Abbas, Jason Kai, Tristan Kuehn, John Demarco, Geetika Gupta, Daniel Cao, Chris Zajner, Abrar Ahmed, Ali Hadi, Patrick Park, Dimuthu Hemachandra, Reid Vassallo, Sandy Wong, Ali R. Khan, Jonathan C. Lau

Presenting author: Alaa Taha

Submitter information
Name: Alaa Taha
Affiliation: Biomedical Engineering; University of Western Ontario

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Neuroimaging

361

GUI-based, extensible, scalable framework for neural image data analysis --- OptiNiSt

Authors: Yukako Yamane, Yuzhe Li, Shogo Akiyama, Shuya Saeki, Masaru Kuwabara, Shigeki Hasui, Ryota Kanai, Carlos Enrique Gutierrez, Kenji Doya

Presenting author: Yukako Yamane

Submitter information
Name: yukako yamane
Affiliation: Okinawa Institute of Science and Technology Graduate University

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Data management

364

Electronic laboratory notebook platform to capture metadata describing the experimental setup and context of neuroimaging experiments

Authors: Praveen Sripad, Adeel Ansari, Alexander Barton, Tanya Brown, James Dickson, Aaryan Goyal, Blake Griggs, Sean Hill, Daniel Marcus, Mohana Ramaratnam, David Rotenberg, Niccolò Bonacchi*, Lucia Melloni*

Presenting author: Praveen Sripad

Submitter information
Name: Praveen Sripad
Affiliation: Max Planck Institute for Empirical Aesthetics

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Neuroimaging

365

Multimodal analysis uncovers links between grey matter volume and frequency-specific connectivity states in schizophrenia

Authors: Marlena Duda, Ashkan Faghiri, Vince Calhoun

Presenting author: Marlena Duda

Submitter information
Name: Marlena Duda
Affiliation: Georgia State University

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Digital atlasing

497

BrainGlobe: tools for neuroanatomy - improving the experience for both users and contributors

Authors: Alessandro A Felder, David Stansby, Adam L Tyson

Presenting author: Alessandro A Felder

Submitter information
Name: Alessandro Felder
Affiliation: University College London

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Data management

500

Comprehensive data and metadata management in a multi-lab collaboration through integration of open-source solutions

Authors: Reema Gupta, Thomas Wachtler

Presenting author: Reema Gupta

Submitter information
Name: Reema Gupta
Affiliation: Ludwig-Maximilians-Universität München

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Computational neuroscience

501

What do network models of naturalistic data tell us? Lessons from music listening

Authors: Sarah Faber, Randy McIntosh

Presenting author: Sarah Faber

Submitter information
Name: Sarah Faber
Affiliation: Baycrest Health Sciences Centre

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Data management

503

Developing an International Data Governance Framework for Brain Data

Authors: Kimberly Ray, Anne MacKenzie, Damian Eke, Fernanda Troval-Moll, Amadi Ihunwo, Ricardo Chavarriaga, Thomas Nichols, and Franco Pestilli

Presenting author: Kimberly Ray

Submitter information
Name: Kimberly Ray
Affiliation: UT Austin

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Data management

504

Building bridges in MR research: unified interface to different MRI dataset formats with MRdataset

Authors: Harsh Sinha, Pradeep Reddy Raamana

Presenting author: Harsh Sinha

Submitter information
Name: Harsh Sinha
Affiliation: University of Pittsburgh

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Neuroimaging

507

Robust individual analysis of multi-band multi-echo functional MRI

Authors: Bahman Tahayori, Robert E Smith, David N Vaughan, Eric Y Pierre, Chris Tailby, Graeme D Jackson, David F Abbott

Presenting author: David F. Abbott

Submitter information
Name: David Abbott
Affiliation: The Florey Institute of Neuroscience and Mental Health

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Data management

510

Automated tools for (systems) neuroscience project standardisation, organisation and discovery

Authors: *Ziminski JJ, *Sirmpilatze N, Porta L, Felder AA, Tyson AL.

Presenting author: Joseph Ziminski, Niko Sirmpilatze

Submitter information
Name: Joseph Ziminski
Affiliation: Sainsbury Wellcome Centre

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Open science + publishing

511

AnalySim: A web platform for collaborative data sharing and analysis for research

Authors: Anca Doloc-Mihu, Cengiz Gunay

Presenting author: Cengiz Gunay

Submitter information
Name: Cengiz Gunay
Affiliation: Georgia Gwinnett College

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General neuroinformatics

517

BRAES: Developing Brain Reference Architecture Editorial System for Accumulating Hypotheses on Neural Functionality

Authors: Yoshimasa Tawatsuji, Yuta Ashihara, Naoya Arakawa, Hiroshi Yamakawa

Presenting author: Yoshimasa Tawatsuji

Submitter information
Name: Yoshimasa Tawatsuji
Affiliation: The University of Tokyo

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Computational neuroscience

518

Proposing a Database Extracting Anatomical Structures from Neuroscience Literature and Evaluating Its Information Credibility

Authors: Yuta Ashihara, Iriya Horiguchi, Hiroshi Yamakawa

Presenting author: Yuta Ashihara

Submitter information
Name: Yuta Ashihara
Affiliation: Nihon University, The University of Tokyo

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Neuroimaging

519

Bridging into AI: open source tools for computer vision

Authors: Alden Conner, Beatriz Costa Gomes, Christopher Soelistyo, Kristina Ulicna, Alejandro Coca Castro, Evangeline Corcoran, Marjan Famili, Isabel Fenton, Aida Mehonic, Oliver Strickson, Louisa van Zeeland, Sebastian Ahnert, Scott Hosking, Alan Lowe

Presenting author: Alden Conner, Beatriz Costa Gomes

Submitter information
Name: Alden Conner
Affiliation: The Alan Turing Institute

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Data management

520

Distributed data management for large collaborative projects: DataLad ecosystem in Collaborative Research Center 1451

Authors: Michał Szczepanik, Stephan Heunis, Christian Mönch, Adina Wagner, Alexander Q. Waite, Laura Waite, Michael Hanke

Presenting author: Michał Szczepanik

Submitter information
Name: Michał Szczepanik
Affiliation: Institute of Neuroscience and Medicine, Brain and Behaviour (INM‑7), Research Center Jülich, Jülich, Germany

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General neuroinformatics

536

Brain Injury Knowledge Ontology (BIKO) for traumatic brain injury for translational traumatic brain injury research

Authors: Monique C. Surles-Zeigler, Troy Sincomb, Fahim Imam, Tom Gillespie, Jeffrey S. Grethe, Adam R. Ferguson, Maryann E. Martone

Presenting author: Monique C. Surles-Zeigler

Submitter information
Name: Monique Surles-Zeigler
Affiliation: University of California, San Diego

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Visualization

554

MEGqc - an automated and standardized quality control workflow for MEG BIDS data

Authors: Aaron Reer, Evgeniia Gapontseva, Jochen W. Rieger

Presenting author: Aaron Reer

Submitter information
Name: Aaron Reer
Affiliation: Scientific software engineer/data scientist

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