Approved Abstracts - INCF Neuroinformatics Assembly 2021
Open science + publishing
29
BiocSwirl: Interactive R Tutorials for Neuroinformatics Workflows & Bioconductor
Submitter information
Name: Lisa Cao
Affiliation: Simon Fraser University
Computational neuroscience
30
Activity-dependent myelination: a glial mechanism of oscillatory self-organization in large-scale brain networks
Submitter information
Name: Jeremie Lefebvre
Affiliation: University of Ottawa
General neuroinformatics
34
Python toolbox for fiber photometry data analysis
Submitter information
Name: Ekaterina Martianova
Affiliation: CERVO Brain Research Center, Laval University
Computational neuroscience
35
Diagnosis of Alzheimer's disease from EEG signals using Quantile Graphs
Submitter information
Name: Andriana Campanharo
Affiliation: Assistant Professor
Neuroimaging
38
Brain Dynamics and Variations in Space
Submitter information
Name: Armin Iraji
Affiliation: Tri-Institutional (GSU, Georgia Tech, Emory) Center for Translational Research in Neuroimaging and Data Science (TReNDS)
Computational neuroscience
41
Automatic Identification of Epileptic Seizures in EEG Signals with the Use of Complex Networks Theory
Submitter information
Name: Gustavo Henrique Tomanik
Affiliation: São Paulo State University
Computational neuroscience
42
How the cerebellum and prefrontal cortex cooperate during associative learning.
Submitter information
Name: Pierandrea Mirino
Affiliation: Sapienza University of Rome
General neuroinformatics
43
A novel software architecture based on WebAssembly for web-based neuroinformatics
Submitter information
Name: Dustin Scheinost
Affiliation: Yale University
Visualization
44
A web-based toolkit for visualizing and interpreting complex connectomic results in BISWeb
Submitter information
Name: javid dadashkarimi
Affiliation: Yale University
Computational neuroscience
45
Browser-Based Neuron Simulation and Analysis Laboratory
Submitter information
Name: Chris Fietkiewicz
Affiliation: Hobart and William Smith Colleges
Computational neuroscience
46
Bioimage Suite Web: A Simple, Modern, & Powerful Software Suite
Submitter information
Name: Stephanie Noble
Affiliation: Yale University
Infrastructural and portal services
47
GIN: Open platform and services for efficient research data management, collaboration and data publication
Submitter information
Name: Michael Sonntag
Affiliation: German Neuroinformatics Node, Ludwig-Maximilians-Universität München, Germany
Visualization
48
NWBWidgets: Interactive Visualization for Neurodata Without Borders Files
Submitter information
Name: Benjamin Dichter
Affiliation: CatalystNeuro
Data management
49
Extending the Neurodata Without Borders data standard to handle new data types and use cases
Submitter information
Name: Ryan Ly
Affiliation: Lawrence Berkeley National Lab
Computational neuroscience
55
A Simple Parametric Representation of the Hodgkin-Huxley Model
Submitter information
Name: Alejandro Rodríguez-Collado
Affiliation: Universidad de Valladolid
Clinical neuroscience
59
LANDSCAPE: A structural MRI-based geometric model for transcranial brain stimulation
Submitter information
Name: Hanna Lu
Affiliation: The Chinese University of Hong Kong
Neuroimaging
61
Variability of scaling exponents in short-term memory fMRI time series
Submitter information
Name: Jeremi Ochab
Affiliation: Jagiellonian University
Infrastructural and portal services
62
Addgene - Open BioMaterials sharing success
Submitter information
Name: Joanne Kamens
Affiliation: Addgene
General neuroinformatics
63
DevoLearn: a platform for open Developmental Data Science, Machine Learning, and Education
Submitter information
Name: Bradly Alicea
Affiliation: OpenWorm Foundation
Electrophysiology
64
Songbird neural data analysis: an open-source software in Python
Submitter information
Name: Eduarda Gervini Centeno
Affiliation: Université de Bordeaux
Infrastructural and portal services
65
Empowering data sharing and big data analytics with Open Data Commons for Traumatic Brain Injury (ODC-TBI)
Submitter information
Name: Austin Chou
Affiliation: University of California San Francisco
Electrophysiology
66
Opponent-channels model of auditory spatial coding may not be tested by using event-related potentials to abrupt lateralization shifts
Submitter information
Name: Barkin Ilhan
Affiliation: Necmettin Erbakan University Meram Medical Faculty
Computational neuroscience
67
webKnossos: Share and annotate large-scale 3D images online
Submitter information
Name: Norman Rzepka
Affiliation: scalable minds GmbH
Digital atlasing
68
Facilitating spatial integration of whole brain imaging data with deep learning
Submitter information
Name: Sylwia Bednarek
Affiliation: Nencki Institute of Experimental Biology, Polish Academy of Sciences
Infrastructural and portal services
69
AMP PD: A FAIR workbench to accelerate the development of therapies for Parkinson’s disease
Submitter information
Name: Leslie Kirsch
Affiliation: Michael J Fox Foundation
Data management
70
Common cell type nomenclature for the mammalian brain: a systematic, extensible convention
Submitter information
Name: Jeremy Miller
Affiliation: Allen Institute for Brain Science
Computing systems
72
Automatic Analysis for more efficient and reproducible M/EEG pipelines
Submitter information
Name: Tibor Auer
Affiliation: University of Surrey
Large-scale modeling
73
Neuroinformatic tool to study high dimensional dynamics with distributed delays in Neural Mass Models
Submitter information
Name: Anisleidy González Mitjans
Affiliation: The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation, University of Electronic Science and Technology…
Data management
75
BIDS-animal-ephys : A standardization proposal for electrophysiological data recorded in animal models
Submitter information
Name: Sylvain Takerkart
Affiliation: Institut de Neurosciences de la Timone, CNRS, Aix-Marseille University, Marseille, France
Digital atlasing
76
Histology-based Average Template of the Marmoset Cortex with Probabilistic Localization of Cytoarchitectural Areas
Submitter information
Name: Piotr Majka
Affiliation: Nencki Institute of Experimental Biology
Large-scale modeling
77
The Brain Scaffold Builder: large-scale modelling framework
Submitter information
Name: Robin De Schepper
Affiliation: Universita degli Studi di Pavia
Infrastructural and portal services
78
Software repositories and registries; so many of registries, so little time. How can registries work together to better support the software developer community?
Submitter information
Name: Anita Bandrowski
Affiliation: SciCrunch Inc
Data management
79
A Toolset for FAIR Reconstruction and Analysis of Microscopy Images
Submitter information
Name: Maci Heal
Affiliation: MBF Bioscience
Artificial intelligence
80
Confounds python library to mitigate effect of covariates and for [multi-site] data harmonization
Submitter information
Name: Pradeep Reddy Raamana
Affiliation: University of Pittsburgh
Electrophysiology
81
Brain Connectivity Variable Resolution Tomographic Analysis (BC-VARETA Toolbox)
Submitter information
Name: Ariosky Areces Gonzalez
Affiliation: University of Electronic Science and Technology
Clinical neuroscience
82
Quantitative EEG Analysis based on Riemannian metric
Submitter information
Name: Ying Wang
Affiliation: University of Electronic Science and Technology of China
Connectomics
83
Analysis of causal relationship between different cortical regions measured by Transfer Entropy
Submitter information
Name: Ania Mesa
Affiliation: University of Electronic Science and Technology of China
Electrophysiology
84
Estimating Overlapped Event-Related Response with EM algorithm
Submitter information
Name: Yanetsy Elisa Rodríguez León
Affiliation: University of Electronics Science and Technology of China
Data management
85
A user friendly approach for metadata collection and organisation for animal electrophysiology experiments
Submitter information
Name: Julia Sprenger
Affiliation: Institut de Neuroscience de la Timone, CNRS, Aix-Marseille University, France
Visualization
86
A visual tool for brain focused single-cell RNA-seq analysis
Submitter information
Name: Lars Jorgensen
Affiliation: Data and Analysis Core, Institut du Cerveau, Inserm U 1127, CNRS UMR 7225, Sorbonne Université, F-75013, Paris, France
Computational neuroscience
87
Geodesic-based distance reveals non-linear topological features in neural activity from mouse visual cortex
Submitter information
Name: Kosio Beshkov
Affiliation: Insitute of Neurobiology Bulgarian Academy of Science; Donders center for Neuroscience, Radboud University
Neuroimaging
88
Barbados Nutrition Study a Case Study for Causal Mediation Effects for High Dimensional Latent Mediator
Submitter information
Name: Fuleah Abdul Razzaq
Affiliation: University of Electronics Science and Technology of China
Neuroimaging
89
Identifying and eliminating differences between EEG and MEG source spectra
Submitter information
Name: Usama Riaz
Affiliation: University of Electronics Science and Technology of China
Computational neuroscience
90
Forward Modeling of EEG Signals: CST Studio Suite versus COMSOL Multiphysics
Submitter information
Name: David Kuratko
Affiliation: Brno University of Technology
Computational neuroscience
91
Improved alignment and registration of axonal morphologies to an atlas using a semi-automated procedure
Submitter information
Name: Maria-Carla Piastra
Affiliation: Radboud University, Donders Institute
Neuroimaging
92
Snakebids: BIDS App-compliant workflow management with Snakemake
Submitter information
Name: Ali Khan
Affiliation: Western University
Computational neuroscience
93
A pipeline to analyze multinational EEG cross-spectra data in the Euclidean space
Submitter information
Name: Carlos Lopez
Affiliation: Univeristy of Electronic Science and Technology of China
Neuroimaging
94
An automated multi-modal neuroimaging pipeline for large-scale network modelling in TheVirtualBrain
Submitter information
Name: Kelly Shen
Affiliation: Rotman Research Institute, Baycrest
General neuroinformatics
95
Stimulating Peripheral Activity to Relieve Conditions (SPARC): Enriching peripheral nervous system ontology development
Submitter information
Name: Monique Surles-Zeigler
Affiliation: University of California, San Diego
Infrastructural and portal services
96
ezBIDS: The open cloud service for automated, validated DICOM to BIDS conversion
Submitter information
Name: Daniel Levitas
Affiliation: Indiana University, Bloomington
Computational neuroscience
97
A simulation-based machine learning approach to demixing EAP sources for extracellular morphological characterization
Submitter information
Name: Vergil Haynes
Affiliation: Arizona State University
General neuroinformatics
98
Modelling individual variability across multiple data streams in music listening and at rest
Submitter information
Name: Sarah Faber
Affiliation: Baycrest Health Sciences Centre
General neuroinformatics
99
HED-3G: The Hierarchical Event Descriptor (HED) framework for annotating events, tasks, experiment conditions and their relationships in neuroimaging and other time series data
Submitter information
Name: Kay Robbins
Affiliation: University of Texas at San Antonio
Open science + publishing
100
NeuroFedora: Free Software for Free Neuroscience
Submitter information
Name: Ankur Sinha
Affiliation: University College London
Open science + publishing
101
PreprintMatch: a new tool to match manuscripts across multiple similarity metrics
Submitter information
Name: Peter Eckmann
Affiliation: UC San Diego
Clinical neuroscience
102
EEG-triggered TMS as a promising approach to the treatment of schizophrenia
Submitter information
Name: Mikhail Baklushev
Affiliation: Institute of cognitive neuroscience of High school of economy, Russia
Infrastructural and portal services
103
A MATLAB tool for tabular and object-oriented data access from the public Allen Brain Observatory data resource
Submitter information
Name: Vijay Iyer
Affiliation: MathWorks
Open science + publishing
104
EEG analysis tools in the CBRAIN and the Cuban Human Brain Mapping Database: a contribution of the Cuba-Canada-China axis and the Global Brain Consortium to Open Science
Submitter information
Name: Jorge Bosch-Bayard
Affiliation: McGill University
Computing systems
105
INCF/OCNS Software Working Group
Submitter information
Name: Shailesh Appukuttan
Affiliation: CNRS
Data systems
106
On performance and behavioral data collection from online neurorehabilitation tool
Submitter information
Name: Roman Mouček
Affiliation: New Technologies for the Information Society, Faculty of Applied Sciences, University of West Bohemia
General neuroinformatics
109
Management and Quality Control of Large Neuroimaging Datasets: Developments from the Barcelonaβeta Brain Research Center
Submitter information
Name: Greg Operto
Affiliation: Barcelonaβeta Brain Research Center
General neuroinformatics
110
Responsive dashboards for XNAT: A flexible framework
Submitter information
Name: Jordi Huguet
Affiliation: Barcelonaβeta Brain Research Center (BBRC)
Neuroimaging
111
Towards translational EEG in freely moving rats: fully implantable 3D-printed technology and other technical challenges
Submitter information
Name: Vlastimil Koudelka
Affiliation: National Institute of Mental Health in Klecany
Clinical neuroscience
112
MELD Project: Harmonisation of a large multi-centre dataset for epilepsy lesion detection
Submitter information
Name: Mathilde Ripart
Affiliation: UCL
Connectomics
113
Automated 3D stitching of axon segments across multiple brain sections
Submitter information
Name: Rembrandt Bakker
Affiliation: Radboud University Nijmegen and Jülich Forschungszentrum
Open science + publishing
114
FAIR data publication on the Open Data Commons for Spinal Cord Injury (odc-sci.org)
Submitter information
Name: Abel Torres Espin
Affiliation: University of California San Francisco
Open science + publishing
115
Towards neuroinformatic interoperability: a reporting standard for neural interface research
Submitter information
Name: Zach McKinney
Affiliation: Scuola Superiore Sant'Anna; IEEE Standards Association
Computational neuroscience
116
Mixed vine copula flows for flexible modelling of neural dependencies
Submitter information
Name: Lazaros Mitskopoulos
Affiliation: University of Edinburgh
Data systems
117
The SPARC Data Structure 2.0
Submitter information
Name: Tom Gillespie
Affiliation: University of California, San Diego
Data management
118
Converting electrophysiology data to community standard formats using Neo
Submitter information
Name: Elodie Legouée
Affiliation: Paris-Saclay Institute of Neuroscience, UMR 9197, Centre National de la Recherche Scientifique/Université Paris-Saclay, Gif-sur-Yvette,…
Infrastructural and portal services
119
Resource Watch - Making Research Resource Issue and Validation Information FAIR
Submitter information
Name: Leo Pascual
Affiliation: UCSD
Neuromorphic engineering
120
Providing community access to large-scale neuromorphic computing systems
Submitter information
Name: Matthieu Sénoville
Affiliation: Paris-Saclay Institute of Neuroscience, UMR 9197, Centre National de la Recherche Scientifique/Université Paris-Saclay, France
Infrastructural and portal services
121
The Decentralized Science Stack
Submitter information
Name: Shady El Damaty
Affiliation: Opscientia
Computing systems
123
FlyBrainLab: A Complete Programming Environment for Discovering the Functional Logic of the Fruit Fly Brain
Submitter information
Name: Tingkai Liu
Affiliation: Columbia University
Infrastructural and portal services
124
A private data sharing infrastructure for multidisciplinary spinal cord injury research
Submitter information
Name: J. Russell Huie
Affiliation: University of California, San Francisco
Electrophysiology
125
Ontology integration and experimental metadata in NWB: modeling Patch-seq datasets
Submitter information
Name: Pamela Baker
Affiliation: Allen Institute for Brain Science
Data systems
126
AnalySim: A web platform for collaborative data sharing and analysis
Submitter information
Name: Cengiz Gunay
Affiliation: Georgia Gwinnett College
Computing systems
127
Mathematical modeling of regulatory mechanisms of interrelated functioning between a human brain and various organs.
Submitter information
Name: Hidirova Mohiniso
Affiliation: Institute of the Development of Digital Technologies and Artificial Intelligence, Uzbekistan